Igor B. Zhulin
Latest
- The importance of cache domains in α2δ proteins and the basis for their gabapentinoid selectivity
- Photoactive Yellow Protein Represents a Distinct, Evolutionarily Novel Family of PAS Domains
- Phyletic Distribution and Diversification of the Phage Shock Protein Stress Response System in Bacteria and Archaea
- Biallelic CACNA2D1 loss-of-function variants cause early-onset developmental epileptic encephalopathy
- Amino acid sensor conserved from bacteria to humans
- A species-specific functional module controls formation of pollen apertures
- Diversity of bacterial chemosensory systems
- The Campylobacter jejuni chemoreceptor Tlp10 has a bimodal ligand-binding domain and specificity for multiple classes of chemoeffectors
- Origins and Molecular Evolution of the NusG Paralog RfaH
- Identification and characterization of a novel CLCN7 variant associated with osteopetrosis
- TREND: a platform for exploring protein function in prokaryotes based on phylogenetic, domain architecture and gene neighborhood analyses
- How bacterial chemoreceptors evolve novel ligand specificities
- MiST 3.0: an updated microbial signal transduction database with an emphasis on chemosensory systems
- Trimeric structure of the ligand-binding domain suggests a mode of communication in bacterial chemoreceptors
- A di-iron protein recruited as an Fe[II] and oxygen sensor for bacterial chemotaxis functions by stabilizing an iron-peroxy species
- Cross talk between chemosensory pathways that modulate chemotaxis and biofilm formation
- Characterization of squamous cell lung cancers from Appalachian Kentucky
- Comparative study of the effect of disease causing and benign mutations in position Q92 on cholesterol binding by the NPC1 N-terminal domain
- Conservation of the separase regulatory domain
- Insights into the evolution of host association through the isolation and characterization of a human periodontal pathogen, Desulfobulbus oralis
- Phylogenetic and protein sequence analysis of bacterial chemoreceptors
- A novel PRRT2 pathogenic variant in a family with Paroxysmal Kinesigenic Dyskinesia and Benign Familial Infantile Seizures
- Assigning chemoreceptors to chemosensory pathways in Pseudomonas aeruginosa
- Sensory repertoire of bacterial chemoreceptors
- Two-Component Signal Transduction: a Special Issue in the Journal of Bacteriology
- Class III histidine kinases: a recently accessorized kinase domain in putative modulators of type IV pili based motility
- Classic Spotlights: Selected highlights from the first 100 years of the Journal of Bacteriology
- By staying together, two genes keep the motor running
- Aquerium: a web application for comparative exploration of domain-based protein occurrences on the taxonomically clustered genome tree
- Classic spotlight: Genetics of Escherichia coli chemotaxis
- A direct-sensing galactose chemoreceptor recently evolved in invasive strains of Campylobacter jejuni
- Classic spotlight: 16S rRNA redefines microbiology
- The conserved TPR-containing C-terminal domain of Pseudomonas aeruginosa FimV is required for its cAMP-dependent and independent functions
- Cache domains that are homologous to, but different from PAS domains comprise the largest superfamily of extracellular sensors in prokaryotes
- Establishing precise evolutionary history of a gene improves predicting disease causing missense mutations
- Evolutionary genomics suggests that CheV is an additional adaptor for accommodating specific chemoreceptors within the chemotaxis signaling complex
- Joint mouse-human phenome-wide association to test gene function and disease risk
- Databases for microbiologists
- CDvist: a webserver for identification and visualization of conserved domains in protein sequences
- Sisters Unbound is required for meiotic centromeric cohesion in Drosophila melanogaster
- A phenylalanine rotameric switch for signal-state control in bacterial chemoreceptors
- Conformational coupling between receptor and kinase binding sites through a conserved salt bridge in a signaling complex scaffold protein
- SeqDepot: a streamlined database of protein sequences and precomputed features
- Homology modeling of the CheW coupling protein of the chemotaxis signaling complex
- Chemoreceptor gene loss and acquisition via horizontal gene transfer in Escherichia coli
- Analysis of activator and repressor functions reveals the requirements for transcriptional control by LuxR, the master regulator of quorum sensing in Vibrio harveyi
- The 3.2 A resolution structure of a Receptor:CheA:CheW signaling complex defines overlapping binding sites and key residue interactions within bacterial chemosensory arrays
- Dynamics of domain coverage of the protein sequence universe
- Sequence, structure and evolution of cellulases in the glycosyl hydrolase family 48
- Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments
- Cellulases: ambiguous non-homologous enzymes in a genomic perspective
- Origins and diversification of a complex signal transduction system in prokaryotes
- Evolution and phyletic distribution of two component signal transduction systems
- A PAS-domain containing chemoreceptor couples dynamic changes in metabolism with chemotaxis
- The MiST2 database: a comprehensive genomics resource on microbial signal transduction
- Universal architecture of bacterial chemoreceptor arrays
- HSP-HMMER: a tool for protein domain identification on a large scale
- The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota
- Conserved residues in the HAMP domain define a new family of proposed bipartite energy taxis receptors
- It is computation time for bacteriology!
- Towards environmental systems biology of Shewanella
- CheC is related to the family of flagellar switch proteins and acts independently from CheD to control chemotaxis in Bacillus subtilis
- Complete genome sequence of the complex carbohydrate-degrading marine bacterium Saccharophagus degradans strain 2-40 T
- Genome sequence of the Crenarchaeal hyperthermophile Thermofilum pendens reveals an unprecedented loss of biosynthetic pathways in a free-living organism
- Bacterial sensing and motility: sure bets
- FIST: a sensory domain for diverse signal transduction pathways in prokaryotes and ubiquitin signaling in eukaryotes
- Comparative genomic and protein sequence analyses of a complex system controlling bacterial chemotaxis
- Evolutionary genomics reveals conserved structural determinants of signaling and adaptation in microbial chemoreceptors
- MiST: a Microbial Signal Transduction database
- Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73 M bp genome shaped for versatility
- Chemotaxis in soil diazotrophs: survival and adaptive response
- Four-helical bundle: a ubiquitous sensory module in prokaryotic signal transduction
- One-component regulators dominate signal transduction in prokaryotes
- Ecological role of energy taxis
- Digging with experimental pick and computational shovel: a new addition to the histidine kinase superfamily
- Model of bacterial band formation in aerotaxis
- Aer and Tsr guide Escherichia coli in spatial gradients of oxidizable substrates
- Molecular evolution of sensory domains in cyanobacterial chemoreceptors
- The NIT domain: a predicted nitrate responsive module in bacterial sensory receptors
- Different evolutionary constraints on CheW and CheY proteins revealed by heterologous expression studies and protein sequence analysis
- Common sensory domains in transmembrane receptors for diverse signal transduction pathways in Bacteria and Archaea
- Dual recognition of the bacterial chemoreceptor by chemotaxis-specific domains of the CheR methyltransferase
- Predicted structure and phyletic distribution of the RNA binding protein Hfq
- Positioning cloning of the murine flavivirus resistance gene
- Bacillus subtilis and Its Closest Relatives: from Genes to Cells
- A major chemotaxis gene cluster in Azospirillum brasilense and relationships between chemotaxis operons in α-proteobacteria
- ANTAR: an RNA-binding domain in transcription antitermination regulatory proteins
- Quod erat demonstrandum? The mystery of experimental validation of apparently erroneous computational analyses of protein sequences
- CHASE: an extracellular sensing domain common to transmembrane receptors from prokaryotes, lower eukaryotes and plants
- More than one way to sense chemicals
- The superfamily of chemotaxis transducers: from physiology to genomics and back
- Energy taxis is the dominant behavior in Azospirillum brasilense
- A novel phototaxis receptor hidden in the cyanobacterial genome
- Laccases are widespread in bacteria
- Loss of cytochrome c oxidase activity and acquisition of resistance to quinone analogs in a laccase-positive variant of Azospirillum lipoferum
- PAS domains: internal sensors of oxygen, redox potential, and light
- PAS domain S-boxes in Archaea, Bacteria and sensors for oxygen and redox
- Behavioral responses of Escherichia coli to changes in redox potential
- Oxygen taxis and proton motive force in Azospirillum brasilense
- Motility, chemokinesis, and methylation-independent chemotaxis in Azospirillum brasilense
- The role of taxis in the ecology of Azospirillum
- Behaviour of Azospirillum brasilense in a spatial gradient of oxygen and in a ‘redox’ gradient of an artificial electron acceptor
- A rapid method for the measurement of bacterial chemotaxis